General theories of linear gravitational perturbations to a Schwarzschild Black Hole

(2017)

Authors:

Oliver J Tattersall, Pedro G Ferreira, Macarena Lagos

Ultrahigh-energy cosmic rays from tidally-ignited white dwarfs

Physical Review D American Physical Society 96:10 (2017) 103003

Authors:

Rafael Alves Batista, Joseph Silk

Abstract:

Ultrahigh-energy cosmic rays (UHECRs) can be accelerated by tidal disruption events of stars by black holes. We suggest a novel mechanism for UHECR acceleration wherein white dwarfs (WDs) are tidally compressed by intermediate-mass black holes (IMBHs), leading to their ignition and subsequent explosion as a supernova. Cosmic rays accelerated by the supernova may receive an energy boost when crossing the accretion-powered jet. The rate of encounters between WDs and IMBHs can be relatively high, as the number of IMBHs may be substantially augmented once account is taken of their likely presence in dwarf galaxies. Here we show that this kind of tidal disruption event naturally provides an intermediate composition for the observed UHECRs, and suggest that dwarf galaxies and globular clusters are suitable sites for particle acceleration to ultrahigh energies.

Gas flows in the circumgalactic medium around simulated high-redshift galaxies

Monthly Notices of the Royal Astronomical Society Oxford University Press 474:4 (2017) 4279-4301

Authors:

PD Mitchell, J Blaizot, Julien Devriendt, T Kimm, L Michel-Dansac, J Rosdahl, Adrianne Slyz

Abstract:

We analyse the properties of circumgalactic gas around simulated galaxies in the redshift range z ≥ 3, utilizing a new sample of cosmological zoom simulations. These simulations are intended to be representative of the observed samples of Lyman α (Ly α) emitters recently obtained with the multi unit spectroscopic explorer (MUSE) instrument (halo masses ~ 10 10 - 10 11 M⊙). We show that supernova feedback has a significant impact on both the inflowing and outflowing circumgalactic medium (CGM) by driving outflows, reducing diffuse inflow rates, and by increasing the neutral fraction of inflowing gas. By temporally stacking simulation outputs, we find that significant net mass exchange occurs between inflowing and outflowing phases: none of the phases are mass-conserving. In particular, we find that the mass in neutral outflowing hydrogen declines exponentially with radius as gas flows outwards from the halo centre. This is likely caused by a combination of both fountain-like cycling processes and gradual photoionization/collisional ionization of outflowing gas. Our simulations do not predict the presence of fast-moving neutral outflows in the CGM. Neutral outflows instead move with modest radial velocities (~ 50 km s -1 ), and the majority of the kinetic energy is associated with tangential rather than radial motion.

Learning Influential Genes on Cancer Gene Expression Data with Stacked Denoising Autoencoders

Institute of Electrical and Electronics Engineers (IEEE) (2017) 1201-1205

Authors:

Vítor Teixeira, Rui Camacho, Pedro G Ferreira

Co-expression networks reveal the tissue-specific regulation of transcription and splicing

Genome Research Cold Spring Harbor Laboratory 27:11 (2017) 1843-1858

Authors:

Ashis Saha, Yungil Kim, Ariel DH Gewirtz, Brian Jo, Chuan Gao, Ian C McDowell, The GTEx Consortium, Barbara E Engelhardt, Alexis Battle, François Aguet, Kristin G Ardlie, Beryl B Cummings, Ellen T Gelfand, Gad Getz, Kane Hadley, Robert E Handsaker, Katherine H Huang, Seva Kashin, Konrad J Karczewski, Monkol Lek, Xiao Li, Daniel G MacArthur, Jared L Nedzel, Duyen T Nguyen, Michael S Noble, Ayellet V Segrè, Casandra A Trowbridge, Taru Tukiainen, Nathan S Abell, Brunilda Balliu, Ruth Barshir, Omer Basha, Alexis Battle, Gireesh K Bogu, Andrew Brown, Christopher D Brown, Stephane E Castel, Lin S Chen, Colby Chiang, Donald F Conrad, Nancy J Cox, Farhan N Damani, Joe R Davis, Olivier Delaneau, Emmanouil T Dermitzakis, Barbara E Engelhardt, Eleazar Eskin, Pedro G Ferreira, Laure Frésard, Eric R Gamazon, Diego Garrido-Martín, Ariel DH Gewirtz, Genna Gliner, Michael J Gloudemans, Roderic Guigo, Ira M Hall, Buhm Han, Yuan He, Farhad Hormozdiari, Cedric Howald, Hae Kyung Im, Brian Jo, Eun Yong Kang, Yungil Kim, Sarah Kim-Hellmuth, Tuuli Lappalainen, Li, Xin Li, Boxiang Liu, Serghei Mangul, Mark I McCarthy, Ian C McDowell, Pejman Mohammadi, Jean Monlong, Stephen B Montgomery, Manuel Muñoz-Aguirre, Anne W Ndungu, Dan L Nicolae, Andrew B Nobel, Meritxell Oliva, Halit Ongen, John J Palowitch, Nikolaos Panousis, Panagiotis Papasaikas, YoSon Park, Princy Parsana, Anthony J Payne, Christine B Peterson, Jie Quan, Ferran Reverter, Chiara Sabatti, Ashis Saha, Michael Sammeth, Alexandra J Scott, Andrey A Shabalin, Reza Sodaei, Matthew Stephens, Barbara E Stranger, Benjamin J Strober, Jae Hoon Sul, Emily K Tsang, Sarah Urbut, Martijn van de Bunt, Gao Wang, Xiaoquan Wen, Fred A Wright, Hualin S Xi, Esti Yeger-Lotem, Zachary Zappala, Judith B Zaugg, Yi-Hui Zhou, Joshua M Akey, Daniel Bates, Joanne Chan, Lin S Chen, Melina Claussnitzer, Kathryn Demanelis, Morgan Diegel, Jennifer A Doherty, Andrew P Feinberg, Marian S Fernando, Jessica Halow, Kasper D Hansen, Eric Haugen, Peter F Hickey, Lei Hou, Farzana Jasmine, Ruiqi Jian, Lihua Jiang, Audra Johnson, Rajinder Kaul, Manolis Kellis, Muhammad G Kibriya, Kristen Lee, Jin Billy Li, Qin Li, Xiao Li, Jessica Lin, Shin Lin, Sandra Linder, Caroline Linke, Yaping Liu, Matthew T Maurano, Benoit Molinie, Stephen B Montgomery, Jemma Nelson, Fidencio J Neri, Meritxell Oliva, Yongjin Park, Brandon L Pierce, Nicola J Rinaldi, Lindsay F Rizzardi, Richard Sandstrom, Andrew Skol, Kevin S Smith, Michael P Snyder, John Stamatoyannopoulos, Barbara E Stranger, Hua Tang, Emily K Tsang, Li Wang, Meng Wang, Nicholas Van Wittenberghe, Fan Wu, Rui Zhang, Concepcion R Nierras, Philip A Branton, Latarsha J Carithers, Ping Guan, Helen M Moore, Abhi Rao, Jimmie B Vaught, Sarah E Gould, Nicole C Lockart, Casey Martin, Jeffery P Struewing, Simona Volpi, Anjene M Addington, Susan E Koester, A Roger Little, Lori E Brigham, Richard Hasz, Marcus Hunter, Christopher Johns, Mark Johnson, Gene Kopen, William F Leinweber, John T Lonsdale, Alisa McDonald, Bernadette Mestichelli, Kevin Myer, Brian Roe, Michael Salvatore, Saboor Shad, Jeffrey A Thomas, Gary Walters, Michael Washington, Joseph Wheeler, Jason Bridge, Barbara A Foster, Bryan M Gillard, Ellen Karasik, Rachna Kumar, Mark Miklos, Michael T Moser, Scott D Jewell, Robert G Montroy, Daniel C Rohrer, Dana R Valley, David A Davis, Deborah C Mash, Anita H Undale, Anna M Smith, David E Tabor, Nancy V Roche, Jeffrey A McLean, Negin Vatanian, Karna L Robinson, Leslie Sobin, Mary E Barcus, Kimberly M Valentino, Liqun Qi, Steven Hunter, Pushpa Hariharan, Shilpi Singh, Ki Sung Um, Takunda Matose, Maria M Tomaszewski, Laura K Barker, Maghboeba Mosavel, Laura A Siminoff, Heather M Traino, Paul Flicek, Thomas Juettemann, Magali Ruffier, Dan Sheppard, Kieron Taylor, Stephen J Trevanion, Daniel R Zerbino, Brian Craft, Mary Goldman, Maximilian Haeussler, W James Kent, Christopher M Lee, Benedict Paten, Kate R Rosenbloom, John Vivian, Jingchun Zhu