Experimental Evidence for Conformational Spread in the Bacterial Switch Complex

Biophysical Journal Elsevier 96:3 (2009) 630a

Authors:

Richard W Branch, Fan Bai, Dan V Nicolau, Teuta Pilizota, Bradley Steel, Philip K Maini, Richard M Berry

How Does The Bacterial Flagellar Motor Of Rhodobacter Sphaeroides Stop - Using A Clutch Or A Brake?

Biophysical Journal Elsevier 96:3 (2009) 630a

Authors:

Teuta Pilizota, Mostyn T Brown, Mark C Leake, Richard M Berry, Judith P Armitage

Single-Molecule Studies of Rotary Molecular Motors

Chapter in Handbook of Single-Molecule Biophysics, Springer Nature (2009) 183-216

Authors:

Teuta Pilizota, Yoshiyuki Sowa, Richard M Berry

Variable stoichiometry of the TatA component of the twin-arginine protein transport system observed by in vivo single-molecule imaging.

Proc Natl Acad Sci U S A 105:40 (2008) 15376-15381

Authors:

Mark C Leake, Nicholas P Greene, Rachel M Godun, Thierry Granjon, Grant Buchanan, Shuyun Chen, Richard M Berry, Tracy Palmer, Ben C Berks

Abstract:

The twin-arginine translocation (Tat) system transports folded proteins across the bacterial cytoplasmic membrane and the thylakoid membrane of plant chloroplasts. The essential components of the Tat pathway are the membrane proteins TatA, TatB, and TatC. TatA is thought to form the protein translocating element of the Tat system. Current models for Tat transport make predictions about the oligomeric state of TatA and whether, and how, this state changes during the transport cycle. We determined the oligomeric state of TatA directly at native levels of expression in living cells by photophysical analysis of individual yellow fluorescent protein-labeled TatA complexes. TatA forms complexes exhibiting a broad range of stoichiometries with an average of approximately 25 TatA subunits per complex. Fourier analysis of the stoichiometry distribution suggests the complexes are assembled from tetramer units. Modeling the diffusion behavior of the complexes suggests that TatA protomers associate as a ring and not a bundle. Each cell contains approximately 15 mobile TatA complexes and a pool of approximately 100 TatA molecules in a more disperse state in the membrane. Dissipation of the protonmotive force that drives Tat transport has no affect on TatA complex stoichiometry. TatA complexes do not form in cells lacking TatBC, suggesting that TatBC controls the oligomeric state of TatA. Our data support the TatA polymerization model for the mechanism of Tat transport.

Characterization and application of controllable local chemical changes produced by reagent delivery from a nanopipet.

Journal of the American Chemical Society 130:31 (2008) 10386-10393

Authors:

Joe D Piper, Chao Li, Chien-Jung Lo, Richard Berry, Yuri Korchev, Liming Ying, David Klenerman

Abstract:

We introduce a versatile method that allows local and repeatable delivery (or depletion) of any water-soluble reagent from a nanopipet in ionic solution to make localized controlled changes in reagent concentration at a surface. In this work, Na(+) or OH(-) ions were dosed from the pipet using pulsed voltage-driven delivery. Total internal reflection fluorescence from CoroNa Green dye in the bath for Na(+) ions or fluorescein in the bath for pH quantified the resulting changes in local surface concentration. These changes had a time response as short as 10 ms and a radius of 1-30 microm and depended on the diameter of the pipet used, the applied voltage, and the pipet-surface separation. After the pipet dosing was characterized in detail, two proof-of-concept experiments on single cells and single molecules were then performed. We demonstrated local control of the sodium-sensitive flagellar motor in single Escherichia coli chimera on the time scale of 1 s by dosing sodium and monitoring the rotation of a 1 microm diameter bead fixed to the flagellum. We also demonstrated triggered single-molecule unfolding by dosing acid from the pipet to locally melt individual molecules of duplex DNA, as observed using fluorescent resonance energy transfer.