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Theoretical physicists working at a blackboard collaboration pod in the Beecroft building.
Credit: Jack Hobhouse

Julia Yeomans OBE FRS

Professor of Physics

Research theme

  • Biological physics

Sub department

  • Rudolf Peierls Centre for Theoretical Physics

Research groups

  • Condensed Matter Theory
Julia.Yeomans@physics.ox.ac.uk
Telephone: 01865 (2)76884 (college),01865 (2)73992
Rudolf Peierls Centre for Theoretical Physics, room 70.10
www-thphys.physics.ox.ac.uk/people/JuliaYeomans
  • About
  • Publications

Lévy fluctuations and mixing in dilute suspensions of algae and bacteria.

J R Soc Interface 8:62 (2011) 1314-1331

Authors:

Irwin M Zaid, Jörn Dunkel, Julia M Yeomans

Abstract:

Swimming micro-organisms rely on effective mixing strategies to achieve efficient nutrient influx. Recent experiments, probing the mixing capability of unicellular biflagellates, revealed that passive tracer particles exhibit anomalous non-Gaussian diffusion when immersed in a dilute suspension of self-motile Chlamydomonas reinhardtii algae. Qualitatively, this observation can be explained by the fact that the algae induce a fluid flow that may occasionally accelerate the colloidal tracers to relatively large velocities. A satisfactory quantitative theory of enhanced mixing in dilute active suspensions, however, is lacking at present. In particular, it is unclear how non-Gaussian signatures in the tracers' position distribution are linked to the self-propulsion mechanism of a micro-organism. Here, we develop a systematic theoretical description of anomalous tracer diffusion in active suspensions, based on a simplified tracer-swimmer interaction model that captures the typical distance scaling of a microswimmer's flow field. We show that the experimentally observed non-Gaussian tails are generic and arise owing to a combination of truncated Lévy statistics for the velocity field and algebraically decaying time correlations in the fluid. Our analytical considerations are illustrated through extensive simulations, implemented on graphics processing units to achieve the large sample sizes required for analysing the tails of the tracer distributions.
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Anisotropic imbibition on surfaces patterned with polygonal posts.

Philos Trans A Math Phys Eng Sci 369:1945 (2011) 2519-2527

Authors:

ML Blow, JM Yeomans

Abstract:

We present and interpret lattice Boltzmann simulations of thick films spreading on surfaces patterned with polygonal posts. We show that the mechanism of pinning and depinning differs with the direction of advance, and demonstrate that this leads to anisotropic spreading within a certain range of material contact angles.
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Hydrodynamic synchronization at low Reynolds number

Soft Matter 7:7 (2011) 3074-3082

Authors:

R Golestanian, JM Yeomans, N Uchida

Abstract:

After a long gap following the classic work of Taylor, there have recently been several studies dealing with hydrodynamic synchronization. It is now apparent that synchronization driven by hydrodynamic interactions is not only possible, but relevant to the efficiency of pumping by arrays of cilia and to bacterial swimming. Recent work has included experiments demonstrating synchronization, both in model systems and between bacterial flagella. The effect has been demonstrated in model swimmers and pumps, and large scale simulations have been used to investigate synchronization of cilia and of sperm cells. In this review article, we summarize the various experimental and theoretical studies of hydrodynamic synchronization, and put them in a framework which draws parallels between the different systems and suggests useful directions for further research. © The Royal Society of Chemistry 2011.
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Confinement of knotted polymers in a slit

MOLECULAR PHYSICS 109:7-10 (2011) 1289-1295

Authors:

R Matthews, AA Louis, JM Yeomans
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Three-dimensional colloidal crystals in liquid crystalline blue phases.

Proc Natl Acad Sci U S A 108:13 (2011) 5188-5192

Authors:

Miha Ravnik, Gareth P Alexander, Julia M Yeomans, Slobodan Žumer

Abstract:

Applications for photonic crystals and metamaterials put stringent requirements on the characteristics of advanced optical materials, demanding tunability, high Q factors, applicability in visible range, and large-scale self-assembly. Exploiting the interplay between structural and optical properties, colloidal lattices embedded in liquid crystals (LCs) are promising candidates for such materials. Recently, stable two-dimensional colloidal configurations were demonstrated in nematic LCs. However, the question as to whether stable 3D colloidal structures can exist in an LC had remained unanswered. We show, by means of computer modeling, that colloidal particles can self-assemble into stable, 3D, periodic structures in blue phase LCs. The assembly is based on blue phases providing a 3D template of trapping sites for colloidal particles. The particle configuration is determined by the orientational order of the LC molecules: Specifically, face-centered cubic colloidal crystals form in type-I blue phases, whereas body-centered crystals form in type-II blue phases. For typical particle diameters (approximately 100 nm) the effective binding energy can reach up to a few 100 k(B)T, implying robustness against mechanical stress and temperature fluctuations. Moreover, the colloidal particles substantially increase the thermal stability range of the blue phases, for a factor of two and more. The LC-supported colloidal structure is one or two orders of magnitude stronger bound than, e.g., water-based colloidal crystals.
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