David Marshall

Abstract:

<jats:title>Abstract</jats:title><jats:p>We use an ocean general circulation model and its adjoint to analyze the causal chain linking sea surface buoyancy anomalies in the Labrador Sea to variability in the deep branch of the Atlantic meridional overturning circulation (AMOC) on inter-annual timescales. Our study highlights the importance of the North Atlantic Current (NAC) for the north-to-south connectivity in the AMOC and for the meridional transport of Lower North Atlantic Deep Water (LNADW). We identify two mechanisms that allow the Labrador Sea to impact velocities in the LNADW layer. The first mechanism involves a passive advection of surface buoyancy anomalies from the Labrador Sea towards the eastern subpolar gyre by the background NAC. The second mechanism plays a dominant role and involves a dynamical response of the NAC to surface density anomalies originating in the Labrador Sea; the NAC adjustment modifies the northward transport of salt and heat and exerts a strong positive feedback, amplifying the upper ocean buoyancy anomalies. The two mechanisms spin up/down the subpolar gyre on a timescale of years, while boundary trapped waves rapidly communicate this signal to the subtropics and trigger an adjustment of LNADW transport on a timescale of months. The NAC and the eastern subpolar gyre play an essential role in both mechanisms linking the Labrador Sea with LNADW transport variability and the subtropical AMOC. We thus reconcile two apparently contradictory paradigms about AMOC connectivity: (1) Labrador Sea buoyancy anomalies drive AMOC variability; (2) water mass transformation is largest in the eastern subpolar gyre.</jats:p>

Abstract:

Gyres are prominent surface structures in the global ocean circulation that often interact with the sea floor in a complex manner. Diagnostic methods, such as the depth-integrated vorticity budget, are needed to assess exactly how such model circulations interact with the bathymetry. Terms in the vorticity budget can be integrated over the area enclosed by streamlines to identify forces that spin gyres up and down. In this article we diagnose the depth-integrated vorticity budgets of both idealized gyres and the Weddell Gyre in a realistic global model. It is shown that spurious forces play a significant role in the dynamics of all gyres presented and that they are a direct consequence of the Arakawa C-grid discretization and the z-coordinate representation of the sea floor. The spurious forces include a numerical beta effect and interactions with the sea floor which originate from the discrete Coriolis force when calculated with the following schemes: the energy conserving scheme; the enstrophy conserving scheme; and the energy and enstrophy conserving scheme. Previous studies have shown that bottom pressure torques provide the main interaction between the depth-integrated flow and the sea floor. Bottom pressure torques are significant, but spurious interactions with bottom topography are similar in size. Possible methods for reducing the identified spurious topographic forces are discussed. Spurious topographic forces can be alleviated by using either a B-grid in the horizontal plane or a terrain-following vertical coordinate.

Abstract:

In comparison to globular proteins, the spontaneous folding and insertion of β-barrel membrane proteins are surprisingly slow, typically occurring on the order of minutes. Using single-molecule Förster resonance energy transfer to report on the folding of fluorescently labeled outer membrane protein G we measured the real-time insertion of a β-barrel membrane protein from an unfolded state. Folding events were rare and fast (<20 ms), occurring immediately upon arrival at the membrane. This combination of infrequent, but rapid, folding resolves this apparent dichotomy between slow ensemble kinetics and the typical timescales of biomolecular folding.

Abstract:

<jats:title>Abstract</jats:title> <jats:p>Downstream of Drake Passage, the Antarctic Circumpolar Current (ACC) veers abruptly northward along the continental slope of South America. This spins down the ACC, akin to the western boundary currents of ocean gyres. During this northward excursion, the mean potential vorticity (PV) increases dramatically (decreases in magnitude) by up to a factor of two along mean geostrophic streamlines on mid-depth buoyancy surfaces. This increase is driven by drag near the continental slope, or by breaking eddies further offshore, and is balanced by a remarkably steady, eddy-driven decrease of mean PV along these northern circumpolar streamlines in the open ocean. We show how two related eddy processes that are fundamental to ACC dynamics — poleward buoyancy fluxes and downward fluxes of eastward momentum — are also concomitant with materially forcing PV to increase on the northern flank of a jet at mid-depth, and decrease on the southern flank. For eddies to drive the required mean PV decrease along northern streamlines, the ACC merges with the subtropical gyres to the north, so these streamlines inhabit the southern flanks of the combined ACC-gyre jets. We support these ideas by analyzing the time-mean PV and its budget along time-mean geostrophic streamlines in the Southern Ocean State Estimate. Our averaging formalism is Eulerian, to match the model’s numerics. The Thickness Weighted Average is preferable, but its PV budget cannot be balanced using Eulerian 5-day averaged diagnostics, primarily because the z-level buoyancy and continuity equations’ delicate balances are destroyed upon transformation into the buoyancy-coordinate thickness equation.</jats:p>