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CMP
Credit: Jack Hobhouse

Professor Achillefs Kapanidis

Professor of Biological Physics

Research theme

  • Biological physics

Sub department

  • Condensed Matter Physics

Research groups

  • Gene machines
Achillefs.Kapanidis@physics.ox.ac.uk
Telephone: 01865 (2)72226
Biochemistry Building
groups.physics.ox.ac.uk/genemachines/group
  • About
  • Publications

Structure of the conjugation surface exclusion protein TraT

Communications Biology Springer Nature

Authors:

Nicolas Chen, Alfredas Bukys, Camilla AK Lundgren, Justin C Deme, Hafez El Sayyed, Achillefs N Kapanidis, Susan M Lea, Ben Berks

Abstract:

Conjugal transfer of plasmids between bacteria is a major route for the spread of antimicrobial resistance. Many conjugative plasmids encode exclusion systems that inhibit redundant conjugation. In incompatibility group F (IncF) plasmids surface exclusion is mediated by the outer membrane protein TraT. Here we report the cryoEM structure of the TraT exclusion protein complex from the canonical F plasmid of Escherichia coli. TraT is a hollow homodecamer shaped like a chef’s hat. In contrast to most outer membrane proteins, TraT spans the outer membrane using transmembrane a-helices. We develop a microscopy-based conjugation assay to  probe the effects of directed mutagenesis on TraT. Our analysis provides no support for the idea that TraT has specific interactions with partner proteins. Instead, we infer that TraT is most likely to function by physical interference with conjugation. This work provides structural insight into a natural inhibitor of microbial gene transfer.
Details from ORA
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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Authors:

Diego Duchi, Abhishek Mazumder, Anssi M Malinen, Richard H Ebright, Achillefs N Kapanidis
More details from the publisher

The displacement of the σ70 finger in initial transcription is highly heterogeneous and promoter-dependent

Authors:

Anna Wanga, Abhishek Mazumdera, Achillefs N Kapanidis
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The formation of the bacterial RNA polymerase–promoter open complex involves a branched pathway

Authors:

Anssi M Malinen, Jacob Bakermans, Emil Aalto-Setälä, Martin Blessing, David LV Bauer, Olena Parilova, Georgiy A Belogurov, David Dulin, Achillefs N Kapanidis
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Tightly regulated, yet flexible, directional switching mechanism of a rotary motor

Authors:

Oshri Afanzar, Diana Di Paolo, Miriam Eisenstein, Kohava Levi, Anne Plochowietz, Achillefs N Kapanidis, Richard Michael Berry, Michael Eisenbach
More details from the publisher

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