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Theoretical physicists working at a blackboard collaboration pod in the Beecroft building.
Credit: Jack Hobhouse

Dr Sam Von Der Dunk

Visitor

Research theme

  • Biological physics

Sub department

  • Rudolf Peierls Centre for Theoretical Physics
sam.vonderdunk@physics.ox.ac.uk
Rudolf Peierls Centre for Theoretical Physics, room 60.26
  • About
  • Publications

Developmental bias explains the evolutionary trend towards simple leaf shapes

(2026)

Authors:

James S Malone, Nora S Martin, Samuel HA von der Dunk, Liliana M Dávalos, Ard A Louis
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Developmental bias explains the evolutionary trend towards simple leaf shapes

(2026)

Authors:

James S Malone, Nora S Martin, Samuel HA von der Dunk, Liliana M Dávalos, Ard A Louis
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The risk of sexual reproduction promotes the evolution of regulation between host and symbionts.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences 381:1947 (2026) 20250077

Authors:

Alkmini Zania, Paulien Hogeweg, Sam von der Dunk

Abstract:

Sexual reproduction is a widely spread feature of eukaryotes and was already present in the last eukaryotic common ancestor. While most extant eukaryotes inherit mitochondria from a single parent, the mechanisms enforcing uniparental inheritance vary widely. The first eukaryotes likely would not have evolved such mechanisms yet, so cellular fusion would have led to mitochondrial mixing (biparental inheritance). Here, we explore the evolutionary consequences of biparental inheritance of endosymbionts during host-symbiont coevolution using a multi-level, individual-based model of endosymbiosis. Our results show that biparental inheritance introduces evolutionary conflict, as it facilitates the spread of fast-replicating symbionts, which can drive host populations to extinction. However, in a diverse environment, proto-eukaryotes diversify and adapt to distinct niches, protecting the population from total collapse caused by selfish symbionts. Moreover, this conflict can be resolved through the evolution of signalling mechanisms that allow hosts to regulate symbiont cell cycles. In many cases, sexually reproducing populations not only survive but also outperform their asexual counterparts. We conclude that sexual reproduction could have appeared early during eukaryogenesis and may have facilitated the evolution of host control over the endosymbiont cell cycle. This article is part of the theme issue 'Evolutionary genetics of mitochondria: on diverse and common evolutionary constraints across eukarya'.
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The risk of sexual reproduction promotes the evolution of regulation between host and symbionts

(2025)

Authors:

Alkmini Zania, Paulien Hogeweg, Sam von der Dunk
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Intracellular signaling in proto-eukaryotes evolves to alleviate regulatory conflicts of endosymbiosis

PLoS Computational Biology Public Library of Science 20:2 (2024) e1011860-e1011860

Authors:

Samuel HA von der Dunk, Paulien Hogeweg, Berend Snel

Abstract:

The complex eukaryotic cell resulted from a merger between simpler prokaryotic cells, yet the role of the mitochondrial endosymbiosis with respect to other eukaryotic innovations has remained under dispute. To investigate how the regulatory challenges associated with the endosymbiotic state impacted genome and network evolution during eukaryogenesis, we study a constructive computational model where two simple cells are forced into an obligate endosymbiosis. Across multiple in silico evolutionary replicates, we observe the emergence of different mechanisms for the coordination of host and symbiont cell cycles, stabilizing the endosymbiotic relationship. In most cases, coordination is implicit, without signaling between host and symbiont. Signaling only evolves when there is leakage of regulatory products between host and symbiont. In the fittest evolutionary replicate, the host has taken full control of the symbiont cell cycle through signaling, mimicking the regulatory dominance of the nucleus over the mitochondrion that evolved during eukaryogenesis
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