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Theoretical physicists working at a blackboard collaboration pod in the Beecroft building.
Credit: Jack Hobhouse

Dr Sam Von Der Dunk

Visitor

Research theme

  • Biological physics

Sub department

  • Rudolf Peierls Centre for Theoretical Physics
sam.vonderdunk@physics.ox.ac.uk
Rudolf Peierls Centre for Theoretical Physics, room 60.26
  • About
  • Publications

Obligate endosymbiosis enables genome expansion during eukaryogenesis

Communications Biology Nature Research 6:1 (2023) 777

Authors:

Samuel HA von der Dunk, Paulien Hogeweg, Berend Snel

Abstract:

The endosymbiosis of an alpha-proteobacterium that gave rise to mitochondria was one of the key events in eukaryogenesis. One striking outcome of eukaryogenesis was a much more complex cell with a large genome. Despite the existence of many alternative hypotheses for this and other patterns potentially related to endosymbiosis, a constructive evolutionary model in which these hypotheses can be studied is still lacking. Here, we present a theoretical approach in which we focus on the consequences rather than the causes of mitochondrial endosymbiosis. Using a constructive evolutionary model of cell-cycle regulation, we find that genome expansion and genome size asymmetry arise from emergent host–symbiont cell-cycle coordination. We also find that holobionts with large host and small symbiont genomes perform best on long timescales and mimic the outcome of eukaryogenesis. By designing and studying a constructive evolutionary model of obligate endosymbiosis, we uncovered some of the forces that may drive the patterns observed in nature. Our results provide a theoretical foundation for patterns related to mitochondrial endosymbiosis, such as genome size asymmetry, and reveal evolutionary outcomes that have not been considered so far, such as cell-cycle coordination without direct communication
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Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome

Molecular Biology and Evolution Oxford University Press (OUP) 40:1 (2023) msad011

Authors:

Julian Vosseberg, Daan Stolker, Samuel HA von der Dunk, Berend Snel
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Evolution of Complex Regulation for Cell-Cycle Control

Genome Biology and Evolution Oxford University Press (OUP) 14:5 (2022) evac056

Authors:

Samuel HA von der Dunk, Berend Snel, Paulien Hogeweg
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Recurrent sequence evolution after independent gene duplication

BMC Ecology and Evolution Springer Nature 20:1 (2020) 98

Authors:

Samuel H A. von der Dunk, Berend Snel
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Evolutionary Conflict Leads to Innovation: Symmetry Breaking in a Spatial Model of RNA-Like Replicators

Life MDPI 7:4 (2017) 43

Authors:

Samuel HA von der Dunk, Enrico Sandro Colizzi, Paulien Hogeweg
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