Evaluating deterministic motif significance measures in protein databases

Algorithms for Molecular Biology Springer Nature 2:1 (2007) 16

Authors:

Pedro Gabriel Ferreira, Paulo J Azevedo

On the growth of structure in theories with a dynamical preferred frame

(2007)

Authors:

TG Zlosnik, PG Ferreira, GD Starkman

On the growth of structure in theories with a dynamical preferred frame

ArXiv 0711.0520 (2007)

Authors:

TG Zlosnik, PG Ferreira, GD Starkman

Abstract:

We study the cosmological stability of a class of theories with a dynamical preferred frame. For a range of actions, we find cosmological solutions which are compatible with observations of the recent history of the Universe: a matter dominated era followed by accelerated expansion. We then study the evolution of linear perturbations on these backgrounds and find conditions on the parameters of the theory which allow for the growth of structure sourced by the new degrees of freedom.

Low accretion rates at the AGN cosmic downsizing epoch

Astronomy and Astrophysics 474:3 (2007) 755-762

Authors:

A Babić, L Miller, MJ Jarvis, TJ Turner, DM Alexander, SM Croom

Abstract:

Context. X-ray surveys of Active Galactic Nuclei (AGN) indicate "cosmic downsizing", with the comoving number density of high-luminosity objects peaking at higher redshifts (z ∼ 2) than low-luminosity AGN (z < 1). Aims. We test whether downsizing is caused by activity shifting towards low-mass black holes accreting at near-Eddington rates, or by a change in the average rate of accretion onto supermassive black holes. We estimate the black hole masses and Eddington ratios of an X-ray selected sample of AGN in the Chandra Deep Field South at z < 1, probing the epoch where AGN cosmic downsizing has been reported. Methods. Black hole masses are estimated both from host galaxy stellar masses, which are estimated from fitting to published optical and near-infrared photometry, and from near-infrared luminosities, applying established correlations between black hole mass and host galaxy properties. Both methods give consistent results. Comparison and calibration of possible redshift-dependent effects is also made using published faint host galaxy velocity dispersion measurements. Results. The Eddington ratios in our sample span the range ∼10-5-1, with median log(Lbol/LEdd) = -2.87, and with typical black hole masses MBH ∼ 108 M⊙. The broad distribution of Eddington ratios is consistent with that expected for AGN samples at low and moderate luminosity. We find no evidence that the CDF-S AGN population is dominated by low-mass black holes accreting at near-Eddington ratios and the results suggest that diminishing accretion rates onto average-sized black holes are responsible for the reported AGN downsizing at redshifts below unity. © ESO 2007.

The variable X-ray spectrum of Markarian 766 II. Time-resolved spectroscopy

Astronomy and Astrophysics 475:1 (2007) 121-131

Authors:

TJ Turner, L Miller, JN Reeves, SB Kraemer

Abstract:

Context. The variable X-ray spectra of AGN systematically show steep power-law high states and hard-spectrum low states. The hard, low state has previously been found to be a component with only weak variability. The origin of this component and the relative importance of effects such as absorption and relativistic blurring are currently not clear. Aims. In a follow-up of previous principal components analysis we aim to determine the relative importance of scattering and absorption effects on the time-varying X-ray spectrum of the narrow-line Seyfert 1 galaxy Mrk 766. Methods. Time-resolved spectroscopy, slicing XMM and Suzaku data down to 25 ks elements is used to investigate whether absorption or scattering components dominate the spectral variations in Mrk 766. Results. Time-resolved spectroscopy confirms that spectral variability in Mrk 766 can be explained by either of two interpretations of principal components analysis. Detailed investigation confirm rapid changes in the relative strengths of scattered and direct emission or rapid changes in absorber covering fraction provide good explanations of most of the spectral variability. However, a strong correlation between the 6.97 keV absorption line and primary continuum together with rapid opacity changes show that variations in a complex and multi-layered absorber, most likely a disk wind, are the dominant source of spectral variability in Mrk 766. © ESO 2007.