A simple low-cost device enables four epi-illumination techniques on standard light microscopes

Scientific Reports Nature Publishing Group 6 (2016) 20729

Authors:

Robert Ishmukhametov, Aidan N Russell, Richard J Wheeler, Ashley L Nord, Richard M Berry

Abstract:

Back-scattering darkfield (BSDF), epi-fluorescence (EF), interference reflection contrast (IRC), and darkfield surface reflection (DFSR) are advanced but expensive light microscopy techniques with limited availability. Here we show a simple optical design that combines these four techniques in a simple low-cost miniature epi-illuminator, which inserts into the differential interference-contrast (DIC) slider bay of a commercial microscope, without further additions required. We demonstrate with this device: 1) BSDF-based detection of Malarial parasites inside unstained human erythrocytes; 2) EF imaging with and without dichroic components, including detection of DAPI-stained Leishmania parasite without using excitation or emission filters; 3) RIC of black lipid membranes and other thin films, and 4) DFSR of patterned opaque and transparent surfaces. We believe that our design can expand the functionality of commercial bright field microscopes, provide easy field detection of parasites and be of interest to many users of light microscopy.

Rotational Measurements and Manipulations of the Bacterial Flagellar Motor

Biophysical Journal Elsevier 110:3 (2016) 198a

Authors:

Ashley L Nord, Richard M Berry, Francesco Pedaci

Skewness and kurtosis as indicators of non-Gaussianity in galactic foreground maps

Journal of Cosmology and Astroparticle Physics IOP Publishing 2015:11 (2015) 019-019

Authors:

Assaf Ben-David, Sebastian von Hausegger, Andrew D Jackson

The morphology of the Anomalous Microwave Emission in the Planck 2015 data release

Journal of Cosmology and Astroparticle Physics IOP Publishing 2015:08 (2015) 029-029

Authors:

Sebastian von Hausegger, Hao Liu

Mechanics of torque generation in the bacterial flagellar motor

Proceedings of the National Academy of Sciences National Academy of Sciences 112:32 (2015) E4381-E4389

Authors:

KK Mandadapu, JA Nirody, Richard Berry, G Oster

Abstract:

The bacterial flagellar motor (BFM) is responsible for driving bacterial locomotion and chemotaxis, fundamental processes in pathogenesis and biofilm formation. In the BFM, torque is generated at the interface between transmembrane proteins (stators) and a rotor. It is well established that the passage of ions down a transmembrane gradient through the stator complex provides the energy for torque generation. However, the physics involved in this energy conversion remain poorly understood. Here we propose a mechanically specific model for torque generation in the BFM. In particular, we identify roles for two fundamental forces involved in torque generation: electrostatic and steric. We propose that electrostatic forces serve to position the stator, whereas steric forces comprise the actual “power stroke.” Specifically, we propose that ion-induced conformational changes about a proline “hinge” residue in a stator α-helix are directly responsible for generating the power stroke. Our model predictions fit well with recent experiments on a single-stator motor. The proposed model provides a mechanical explanation for several fundamental properties of the flagellar motor, including torque–speed and speed–ion motive force relationships, backstepping, variation in step sizes, and the effects of key mutations in the stator.