Upstream swimming in microbiological flows

Physical Review Letters American Physical Society 116:2 (2016) 028104

Authors:

Julia Yeomans, Arnold JTM Mathijssen, Tyler N Shendruk, Amin Doostmohammadi

Abstract:

Interactions between microorganisms and their complex flowing environments are essential in many biological systems. We develop a model for microswimmer dynamics in non-Newtonian Poiseuille flows. We predict that swimmers in shear-thickening (-thinning) fluids migrate upstream more (less) quickly than in Newtonian fluids and demonstrate that viscoelastic normal stress differences reorient swimmers causing them to migrate upstream at the centreline, in contrast to well-known boundary accumulation in quiescent Newtonian fluids. Based on these observations, we suggest a sorting mechanism to select microbes by swimming speed.

The Physics of Blastoderm Flow during Early Gastrulation of Tribolium castaneum.

MOLECULAR BIOLOGY OF THE CELL 27 (2016)

Authors:

S Muenster, A Mietke, A Jain, P Tomancak, SW Grill

Emergent SO(5) Symmetry at the Néel to Valence-Bond-Solid Transition

Physical Review Letters American Physical Society 115:26 (2015) 267203

Authors:

Adam Nahum, P Serna, John Chalker, M Ortuño, AM Somoza

Abstract:

We show numerically that the “deconfined” quantum critical point between the Neel antiferromagnet ´ and the columnar valence-bond solid, for a square lattice of spin 1=2, has an emergent SO(5) symmetry. This symmetry allows the Neel vector and the valence-bond solid order parameter to be rotated into each ´ other. It is a remarkable (2 þ 1)-dimensional analogue of the SOð4Þ¼½SUð2Þ × SUð2Þ=Z2 symmetry that appears in the scaling limit for the spin-1=2 Heisenberg chain. The emergent SO(5) symmetry is strong evidence that the phase transition in the (2 þ 1)-dimensional system is truly continuous, despite the violations of finite-size scaling observed previously in this problem. It also implies surprising relations between correlation functions at the transition. The symmetry enhancement is expected to apply generally to the critical two-component Abelian Higgs model (noncompact CP1 model). The result indicates that in three dimensions there is an SO(5)-symmetric conformal field theory that has no relevant singlet operators, so is radically different from conventional Wilson-Fisher-type conformal field theories.

Strong zero modes and eigenstate phase transitions in the XYZ/interacting Majorana chain

(2015)

Supramolecular structure in the membrane of Staphylococcus aureus

Proceedings of the National Academy of Sciences of USA National Academy of Sciences 112:51 (2015) 15725-15730

Authors:

Jorge García-Lara, Felix Weihs, Xing Ma, Lucas Walker, Roy R Chaudhuri, Jagath Kasturiarachchi, Howard Crossley, Ramin Golestanian, Simon J Foster

Abstract:

All life demands the temporal and spatial control of essential biological functions. In bacteria, the recent discovery of coordinating elements provides a framework to begin to explain cell growth and division. Here we present the discovery of a supramolecular structure in the membrane of the coccal bacterium Staphylococcus aureus, which leads to the formation of a large-scale pattern across the entire cell body; this has been unveiled by studying the distribution of essential proteins involved in lipid metabolism (PlsY and CdsA). The organization is found to require MreD, which determines morphology in rod-shaped cells. The distribution of protein complexes can be explained as a spontaneous pattern formation arising from the competition between the energy cost of bending that they impose on the membrane, their entropy of mixing, and the geometric constraints in the system. Our results provide evidence for the existence of a self-organized and nonpercolating molecular scaffold involving MreD as an organizer for optimal cell function and growth based on the intrinsic self-assembling properties of biological molecules.