Direct visualization of the subthalamic nucleus and its iron distribution using high-resolution susceptibility mapping.

Human brain mapping 33:12 (2012) 2831-2842

Authors:

Andreas Schäfer, Birte U Forstmann, Jane Neumann, Sam Wharton, Alexander Mietke, Richard Bowtell, Robert Turner

Abstract:

Histological studies have shown a relatively high iron concentration in the subthalamic nucleus (STN). T2- and T2*-weighted sequences have previously been used to visualize the STN in vivo. The phase information of gradient-echo images reflects the magnetic tissue properties more directly, e.g., iron is more paramagnetic than water. Unfortunately, phase images suffer from non-local effects and orientation dependency. The goal of this study is to delineate the STN more precisely using susceptibility maps, calculated from phase images, which directly index magnetic tissue properties while removing the non-local effects and orientation dependency. Use of 7T MRI enables high spatial resolution with good signal to noise ratio (SNR). Eight healthy subjects were scanned at 7T using a high-resolution 3D gradient-echo sequence. Susceptibility maps were calculated from phase data using a thresholding Fourier approach and a regularization approach using spatial priors. The susceptibility maps clearly distinguish the STN from the adjacent substantia nigra (SN). Their susceptibilities are quantitatively different (0.06 and 0.1 ppm for the STN and SN, respectively). These maps allowed the STN, SN, and the red nucleus to be manually segmented, thus providing 3D visualization of their boundaries. In sum, the STN can be more clearly distinguished from adjacent structures in susceptibility maps than in T2*-weighted images or phase images.

Microscopic model of quasiparticle wave packets in superfluids, superconductors, and paired Hall states.

Physical review letters 109:23 (2012) 237004

Authors:

SA Parameswaran, SA Kivelson, R Shankar, SL Sondhi, BZ Spivak

Abstract:

We study the structure of Bogoliubov quasiparticles, bogolons, the fermionic excitations of paired superfluids that arise from fermion (BCS) pairing, including neutral superfluids, superconductors, and paired quantum Hall states. The naive construction of a stationary quasiparticle in which the deformation of the pair field is neglected leads to a contradiction: it carries a net electrical current even though it does not move. However, treating the pair field self-consistently resolves this problem: in a neutral superfluid, a dipolar current pattern is associated with the quasiparticle for which the total current vanishes. When Maxwell electrodynamics is included, as appropriate to a superconductor, this pattern is confined over a penetration depth. For paired quantum Hall states of composite fermions, the Maxwell term is replaced by a Chern-Simons term, which leads to a dipolar charge distribution and consequently to a dipolar current pattern.

Observation of coherent helimagnons and gilbert damping in an itinerant magnet.

Physical review letters 109:24 (2012) 247204

Authors:

JD Koralek, D Meier, JP Hinton, A Bauer, SA Parameswaran, A Vishwanath, R Ramesh, RW Schoenlein, C Pfleiderer, J Orenstein

Abstract:

We study the magnetic excitations of itinerant helimagnets by applying time-resolved optical spectroscopy to Fe(0.8)Co(0.2)Si. Optically excited oscillations of the magnetization in the helical state are found to disperse to lower frequency as the applied magnetic field is increased; the fingerprint of collective modes unique to helimagnets, known as helimagnons. The use of time-resolved spectroscopy allows us to address the fundamental magnetic relaxation processes by directly measuring the Gilbert damping, revealing the versatility of spin dynamics in chiral magnets.

Translocation through environments with time dependent mobility.

J Chem Phys 137:20 (2012) 204911

Authors:

Jack A Cohen, Abhishek Chaudhuri, Ramin Golestanian

Abstract:

We consider single particle and polymer translocation where the frictional properties experienced from the environment are changing in time. This work is motivated by the interesting frequency responsive behaviour observed when a polymer is passing through a pore with an oscillating width. In order to explain this better we construct general diffusive and non-diffusive frequency response of the gain in translocation time for a single particle in changing environments and look at some specific variations. For two state confinement, where the particle either has constant drift velocity or is stationary, we find exact expressions for both the diffusive and non-diffusive gain. We then apply this approach to polymer translocation under constant forcing through a pore with a sinusoidally varying width. We find good agreement for small polymers at low frequency oscillation with deviations occurring at longer lengths and higher frequencies. Unlike periodic forcing of a single particle at constant mobility, constant forcing with time dependent mobility is amenable to exact solution through manipulation of the Fokker-Planck equation.

Emergent Run-and-Tumble Behavior in a Simple Model of Chlamydomonas with Intrinsic Noise

ArXiv 1211.3272 (2012)

Authors:

Rachel R Bennett, Ramin Golestanian

Abstract:

Recent experiments on the green alga Chlamydomonas that swims using synchronized beating of a pair of flagella have revealed that it exhibits a run-and-tumble behavior similar to that of bacteria such as E. Coli. Using a simple purely hydrodynamic model that incorporates a stroke cycle and an intrinsic Gaussian white noise, we show that a stochastic run-and-tumble behavior could emerge, due to the nonlinearity of the combined synchronization-rotation-translation dynamics. This suggests the intriguing possibility that the alga might exploit nonlinear mechanics---as opposed to sophisticated biochemical circuitry as used by bacteria---to control its behavior.