The effect of topology on the structure and free energy landscape of DNA kissing complexes
Journal of Chemical Physics 136:21 (2012)
Abstract:
We use a recently developed coarse-grained model for DNA to study kissing complexes formed by hybridization of complementary hairpin loops. The binding of the loops is topologically constrained because their linking number must remain constant. By studying systems with linking numbers -1, 0, or 1 we show that the average number of interstrand base pairs is larger when the topology is more favourable for the right-handed wrapping of strands around each other. The thermodynamic stability of the kissing complex also decreases when the linking number changes from -1 to 0 to 1. The structures of the kissing complexes typically involve two intermolecular helices that coaxially stack with the hairpin stems at a parallel four-way junction. © 2012 American Institute of Physics.Wannier Permanent Wave Functions and Featureless Bosonic Mott Insulators on the 1/3 filled Kagome Lattice
(2012)
Onward and upwards: the Advance accelerates
Advances In Physics Taylor & Francis 61:3 (2012) 153-153
Importance of interband transitions for the fractional quantum Hall effect in bilayer graphene
Physical Review B - Condensed Matter and Materials Physics 85:20 (2012)
Abstract:
Several recent works have proposed that electron-electron interactions in bilayer graphene can be tuned with the help of external parameters, making it possible to stabilize different fractional quantum Hall states. In these prior works, phase diagrams were calculated based on a single Landau level approximation. We go beyond this approximation and investigate the influence of polarization effects and virtual interband transitions on the stability of fractional quantum Hall states in bilayer graphene. We find that for realistic values of the dielectric constant, the phase diagram is strongly modified by these effects. We illustrate this by evaluating the region of stability of the Pfaffian state. © 2012 American Physical Society.Quantum Quench in the Transverse Field Ising Chain II: Stationary State Properties
ArXiv 1205.2211 (2012)