Condensed Matter Theory

Abstract:

The equilibrium three dimensional shape of relatively short loops of DNA is studied using an elastic model that takes into account anisotropy in bending rigidities. Using a reasonable estimate for the anisotropy, it is found that cyclized DNA with lengths that are not integer multiples of the pitch take on nontrivial shapes that involve bending out of planes and formation of kinks. The effect of sequence inhomogeneity on the shape of DNA is addressed, and shown to enhance the geometrical features. These findings could shed some light on the role of DNA conformation in protein-DNA interactions.

Abstract:

We derive a continuum theory for the phase transition in a classical dimer model on the cubic lattice, observed in recent Monte Carlo simulations. Our derivation relies on the mapping from a three-dimensional classical problem to a two-dimensional quantum problem, by which the dimer model is related to a model of hard-core bosons on the kagome lattice. The dimer-ordering transition becomes a superfluid-Mott insulator quantum phase transition at fractional filling, described by an SU(2)-invariant continuum theory.

Abstract:

We study a model of strongly correlated electrons on the square lattice which exhibits charge frustration and quantum critical behavior. The potential is tuned to make the interactions supersymmetric. We establish a rigorous mathematical result which relates quantum ground states to certain tiling configurations on the square lattice. For periodic boundary conditions this relation implies that the number of ground states grows exponentially with the linear dimensions of the system. We present substantial analytic and numerical evidence that for open boundary conditions the system has gapless edge modes.