Prof Ramin Golestanian

Abstract:

The effect of the microscopic structure of a pore on polymer translocation is studied using Langevin dynamics simulation, and the consequence of introducing patterned stickiness inside the pore is investigated. It is found that the translocation process is extremely sensitive to the detailed structure of such patterns with faster than exponential dependence of translocation times on the stickiness of the pore. The stochastic nature of the translocation process leads to discernable differences between how polymers with different sequences go through specifically patterned pores. This notion is utilized to propose a stochastic sensing protocol for polynucleotides, and it is demonstrated that the method, which would be significantly faster than the existing methods, could be made arbitrarily robust.

Abstract:

Colloids with patchy metal coating under laser irradiation could act as local heat sources and generate temperature gradients that could induce self-propulsion and interactions between them. The collective behavior of a dilute solution of such thermally active particles is studied using a stochastic formulation. It is found that when the Soret coefficient is positive, the system could be described in a stationary state by the nonlinear Poisson-Boltzmann equation and could adopt density profiles with significant depletion in the middle region when confined. For colloids with a negative Soret coefficient, the system can be described as a dissipative equivalent of a gravitational system. It is shown that in this case the thermally active colloidal solution could undergo an instability at a critical laser intensity, which has similarities to a supernova explosion. © 2012 American Physical Society.

Abstract:

Single file translocation of a homopolymer through an active channel under the presence of a driving force is studied using Langevin dynamics simulation. It is shown that a channel with sticky walls and oscillating width could lead to significantly more efficient translocation as compared to a static channel that has a width equal to the mean width of the oscillating pore. The gain in translocation exhibits a strong dependence on the stickiness of the pore, which could allow the polymer translocation process to be highly selective.

Abstract:

Individually propulsive catalytic Janus particle swimmers are observed to self-assemble into aggregate swimmers with a wide variety of translational and rotational velocities. The trajectory for a given doublet is shown to be determined by the frozen in relative orientation of the particles. The new swimmers suggest applications as transport and mixing devices, and will allow study of the interplay between propulsion and Brownian phenomena. Furthermore this random assembly process can be controlled using external magnetic fields to orientate individual ferromagnetic swimming particles so as to favor the production of swimmers with particular desirable configurations resulting in linear trajectories. This approach also produces swimmers that can be orientated, and so "steered" by external fields. © 2011 Materials Research Society.

Abstract:

Single file translocation of a homopolymer through an active channel under the presence of a driving force is studied using Langevin dynamics simulation. It is shown that a channel with sticky walls and oscillating width could lead to significantly more efficient translocation as compared to a static channel that has a width equal to the mean width of the oscillating pore. The gain in translocation exhibits a strong dependence on the stickiness of the pore, which could allow the polymer translocation process to be highly selective.