Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

Physical Biology IOP Publishing 18:5 (2021) 10.1088/1478-13975/abdc0e

Authors:

Gerard CL Wong, Jyot D Antani, Pushkar P Lele, Jing Chen, Beiyan Nan, Marco J Kühn, Alexandre Persat, Jean-Louis Bru, Nina Molin Høyland-Kroghsbo, Albert Siryaporn, Jacinta C Conrad, Francesco Carrara, Yutaka Yawata, Roman Stocker, Yves V Brun, Gregory B Whitfield, Calvin K Lee, Jaime de Anda, William C Schmidt, Ramin Golestanian, George A O’Toole, Kyle A Floyd, Fitnat H Yildiz, Shuai Yang, Fan Jin, Masanori Toyofuku, Leo Eberl, Nobuhiko Nomura, Lori A Zacharoff, Mohamed Y El-Naggar, Sibel Ebru Yalcin, Nikhil S Malvankar, Mauricio D Rojas-Andrade, Allon I Hochbaum, Jing Yan, Howard A Stone, Ned S Wingreen, Bonnie L Bassler, Yilin Wu, Haoran Xu, Knut Drescher, Jörn Dunkel

Scaling Regimes of Active Turbulence with External Dissipation

Physical Review X 11:3 (2021)

Authors:

B Martínez-Prat, R Alert, F Meng, J Ignés-Mullol, JF Joanny, J Casademunt, R Golestanian, F Sagués

Abstract:

Active fluids exhibit complex turbulentlike flows at low Reynolds number. Recent work predicted that 2D active nematic turbulence follows scaling laws with universal exponents. However, experimentally testing these predictions is conditioned by the coupling to the 3D environment. Here, we measure the spectrum of the kinetic energy in an active nematic film in contact with a passive oil layer. At small and intermediate scales, we find the scaling regimes and , respectively, in agreement with the theoretical prediction for 2D active nematics. At large scales, however, we find a new scaling , which emerges when the dissipation is dominated by the 3D oil layer. In addition, we derive an explicit expression for the spectrum that spans all length scales, thus explaining and connecting the different scaling regimes. This allows us to fit the data and extract the length scale that controls the crossover to the new large-scale regime, which we tune by varying the oil viscosity. Overall, our work experimentally demonstrates the emergence of scaling laws with universal exponents in active turbulence, and it establishes how the spectrum is affected by external dissipation.

From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics.

Physics of life reviews 38 (2021) 55-106

Authors:

Susanna Manrubia, José A Cuesta, Jacobo Aguirre, Sebastian E Ahnert, Lee Altenberg, Alejandro V Cano, Pablo Catalán, Ramon Diaz-Uriarte, Santiago F Elena, Juan Antonio García-Martín, Paulien Hogeweg, Bhavin S Khatri, Joachim Krug, Ard A Louis, Nora S Martin, Joshua L Payne, Matthew J Tarnowski, Marcel Weiß

Abstract:

Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is arguably the next major missing piece in a fully predictive theory of evolution. We refer to this generally as the problem of the genotype-phenotype map. Though we are still far from achieving a complete picture of these relationships, our current understanding of simpler questions, such as the structure induced in the space of genotypes by sequences mapped to molecular structures, has revealed important facts that deeply affect the dynamical description of evolutionary processes. Empirical evidence supporting the fundamental relevance of features such as phenotypic bias is mounting as well, while the synthesis of conceptual and experimental progress leads to questioning current assumptions on the nature of evolutionary dynamics-cancer progression models or synthetic biology approaches being notable examples. This work delves with a critical and constructive attitude into our current knowledge of how genotypes map onto molecular phenotypes and organismal functions, and discusses theoretical and empirical avenues to broaden and improve this comprehension. As a final goal, this community should aim at deriving an updated picture of evolutionary processes soundly relying on the structural properties of genotype spaces, as revealed by modern techniques of molecular and functional analysis.

Systematic strong coupling expansion for out-of-equilibrium dynamics in the Lieb-Liniger model

(2021)

Authors:

Etienne Granet, Fabian HL Essler

Entanglement Action for the Real-Space Entanglement Spectra of Composite Fermion Wave Functions

(2021)

Authors:

Greg J Henderson, GJ Sreejith, Steven H Simon