The hydrodynamics of active systems
Proceedings of the International School of Physics "Enrico Fermi" 193 (2016) 383-416
Abstract:
This is a series of four lectures presented at the 2015 Enrico Fermi Summer School in Varenna. The aim of the lectures is to give an introduction to the hydrodynamics of active matter concentrating on low-Reynolds-number examples such as cells and molecular motors. Lecture 1 introduces the hydrodynamics of single active particles, covering the Stokes equation and the Scallop Theorem, and stressing the link between autonomous activity and the dipolar symmetry of the far flow field. In lecture 2 I discuss applications of this mathematics to the behaviour of microswimmers at surfaces and in external flows, and describe our current understanding of how swimmers stir the surrounding fluid. Lecture 3 concentrates on the collective behaviour of active particles, modelled as an active nematic. I write down the equations of motion and motivate the form of the active stress. The resulting hydrodynamic instability leads to a state termed "active turbulence" characterised by strong jets and vortices in the flow field and the continual creation and annihilation of pairs of topological defects. Lecture 4 compares simulations of active turbulence to experiments on suspensions of microtubules and molecular motors. I introduce lyotropic active nematics and discuss active anchoring at interfaces.Upstream swimming in microbiological flows
Physical Review Letters American Physical Society 116:2 (2016) 028104
Abstract:
Interactions between microorganisms and their complex flowing environments are essential in many biological systems. We develop a model for microswimmer dynamics in non-Newtonian Poiseuille flows. We predict that swimmers in shear-thickening (-thinning) fluids migrate upstream more (less) quickly than in Newtonian fluids and demonstrate that viscoelastic normal stress differences reorient swimmers causing them to migrate upstream at the centreline, in contrast to well-known boundary accumulation in quiescent Newtonian fluids. Based on these observations, we suggest a sorting mechanism to select microbes by swimming speed.The Physics of Blastoderm Flow during Early Gastrulation of Tribolium castaneum.
MOLECULAR BIOLOGY OF THE CELL 27 (2016)
Emergent SO(5) Symmetry at the Néel to Valence-Bond-Solid Transition
Physical Review Letters American Physical Society 115:26 (2015) 267203
Abstract:
We show numerically that the “deconfined” quantum critical point between the Neel antiferromagnet ´ and the columnar valence-bond solid, for a square lattice of spin 1=2, has an emergent SO(5) symmetry. This symmetry allows the Neel vector and the valence-bond solid order parameter to be rotated into each ´ other. It is a remarkable (2 þ 1)-dimensional analogue of the SOð4Þ¼½SUð2Þ × SUð2Þ=Z2 symmetry that appears in the scaling limit for the spin-1=2 Heisenberg chain. The emergent SO(5) symmetry is strong evidence that the phase transition in the (2 þ 1)-dimensional system is truly continuous, despite the violations of finite-size scaling observed previously in this problem. It also implies surprising relations between correlation functions at the transition. The symmetry enhancement is expected to apply generally to the critical two-component Abelian Higgs model (noncompact CP1 model). The result indicates that in three dimensions there is an SO(5)-symmetric conformal field theory that has no relevant singlet operators, so is radically different from conventional Wilson-Fisher-type conformal field theories.Strong zero modes and eigenstate phase transitions in the XYZ/interacting Majorana chain
(2015)