Bifurcations and Dynamics in Inertial Focusing of Particles in Curved Rectangular Ducts

SIAM Journal on Applied Dynamical Systems Society for Industrial & Applied Mathematics (SIAM) 21:4 (2022) 2371-2392

Authors:

Rahil N Valani, Brendan Harding, Yvonne M Stokes

Topological quantum field theory and polynomial identities for graphs on the torus

Annales de l'Institut Henri Poincare (D) Combinatorics, Physics and their Interactions European Mathematical Society Publishing House 10:2 (2022) 277-298

Authors:

Paul Fendley, Vyacheslav Krushkal

Abstract:

We establish a relation between the trace evaluation in SO(3) topological quantum field theory and evaluations of a topological Tutte polynomial. As an application, a generalization of the Tutte golden identity is proved for graphs on the torus.

Shape-tension coupling produces nematic order in an epithelium vertex model

(2022)

Authors:

Jan Rozman, Rastko Sknepnek, Julia M Yeomans

Predicting phenotype transition probabilities via conditional algorithmic probability approximations

Journal of the Royal Society: Interface The Royal Society 19:197 (2022) 20220694

Authors:

Kamaludin Dingle, Javor K Novev, Sebastian E Ahnert, Ard A Louis

Abstract:

Unravelling the structure of genotype–phenotype (GP) maps is an important problem in biology. Recently, arguments inspired by algorithmic information theory (AIT) and Kolmogorov complexity have been invoked to uncover simplicity bias in GP maps, an exponentially decaying upper bound in phenotype probability with the increasing phenotype descriptional complexity. This means that phenotypes with many genotypes assigned via the GP map must be simple, while complex phenotypes must have few genotypes assigned. Here, we use similar arguments to bound the probability P(x → y) that phenotype x, upon random genetic mutation, transitions to phenotype y. The bound is P(x→y)≲2−aK~(y|x)−b , where K~(y|x) is the estimated conditional complexity of y given x, quantifying how much extra information is required to make y given access to x. This upper bound is related to the conditional form of algorithmic probability from AIT. We demonstrate the practical applicability of our derived bound by predicting phenotype transition probabilities (and other related quantities) in simulations of RNA and protein secondary structures. Our work contributes to a general mathematical understanding of GP maps and may facilitate the prediction of transition probabilities directly from examining phenotype themselves, without utilizing detailed knowledge of the GP map.

Fragmented spin ice and multi-k ordering in rare-Earth antiperovskites

Physical Review Letters American Physical Society 129:24 (2022) 247201

Authors:

Attila Szabó, Fabio Orlandi, Pascal Manuel

Abstract:

We study near-neighbor and dipolar Ising models on a lattice of corner-sharing octahedra. In an extended parameter range of both models, frustration between antiferromagnetism and a spin-ice-like three-in-three-out rule stabilizes a Coulomb phase with correlated dipolar and quadrupolar spin textures, both yielding distinctive neutron-scattering signatures. Strong further-neighbor perturbations cause the two components to order independently, resulting in unusual multi-k orders. We propose experimental realizations of our model in rare-earth antiperovskites.