Fluid transport by individual microswimmers

Journal of Fluid Mechanics 726 (2013) 5-25

Authors:

DO Pushkin, H Shum, JM Yeomans

Abstract:

We discuss the path of a tracer particle as a microswimmer moves past on an infinite, straight trajectory. If the tracer is sufficiently far from the path of the swimmer it moves in a closed loop. As the initial distance between the tracer and the path of the swimmer ρ decreases, the tracer is displaced a small distance backwards (relative to the direction of the swimmer velocity). For much smaller tracer-swimmer separations, however, the tracer displacement becomes positive and diverges as ρ → 0. To quantify this behaviour we calculate the Darwin drift, the total volume swept out by a material sheet of tracers, initially perpendicular to the swimmer path, during the swimmer motion. We find that the drift can be written as the sum of a universal term which depends on the quadrupolar flow field of the swimmer, together with a non-universal contribution given by the sum of the volumes of the swimmer and its wake. The formula is compared to exact results for the squirmer model and to numerical calculations for a more realistic model swimmer. © 2013 Cambridge University Press.

Coarse-graining DNA for simulations of DNA nanotechnology

PHYSICAL CHEMISTRY CHEMICAL PHYSICS 15:47 (2013) 20395-20414

Authors:

Jonathan PK Doye, Thomas E Ouldridge, Ard A Louis, Flavio Romano, Petr Sulc, Christian Matek, Benedict EK Snodin, Lorenzo Rovigatti, John S Schreck, Ryan M Harrison, William PJ Smith

DNA hybridization kinetics: zippering, internal displacement and sequence dependence

NUCLEIC ACIDS RESEARCH 41:19 (2013) 8886-8895

Authors:

Thomas E Ouldridge, Petr Sulc, Flavio Romano, Jonathan PK Doye, Ard A Louis

Dynamics of solutes with hydrodynamic interactions: Comparison between Brownian dynamics and stochastic rotation dynamics simulations

PHYSICAL REVIEW E 88:4 (2013) ARTN 043304

Authors:

G Batot, V Dahirel, G Meriguet, AA Louis, M Jardat

Entanglement spectrum of composite fermion states in real space

PHYSICAL REVIEW B 88:15 (2013) ARTN 155307

Authors:

Ivan D Rodriguez, Simon C Davenport, Steven H Simon, JK Slingerland